src/parallel_tempering.h

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/*
    APEMoST - Automated Parameter Estimation and Model Selection Toolkit
    Copyright (C) 2009  Johannes Buchner

    This program is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.

    This program is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.

    You should have received a copy of the GNU General Public License
    along with this program.  If not, see <http://www.gnu.org/licenses/>.
 */

#ifndef PARALLEL_TEMPERING_H_
#define PARALLEL_TEMPERING_H_

#include "mcmc.h"
#include "parallel_tempering_beta.h"

#ifdef __NEVER_SET_FOR_DOCUMENTATION_ONLY

#define DUMP_ALL_CHAINS

#define SKIP_CALIBRATE_ALLCHAINS
#endif

#ifndef PRINT_PROB_INTERVAL

#define PRINT_PROB_INTERVAL 1000
#endif

#define CALIBRATION_FILE "calibration_results"

void calibrate_first();

void prepare_and_run_sampler(unsigned long max_iterations, int append);

void calibrate_rest();

void analyse_marginal_distributions();

void analyse_data_probability();

#endif /* PARALLEL_TEMPERING_H_ */