src/mcmc.c File Reference

#include <string.h>
#include <stdio.h>
#include <libgen.h>
#include "mcmc.h"
#include "gsl_helper.h"
#include "debug.h"

Functions
void	init_seed (mcmc *m)
mcmc *	mcmc_init (const unsigned int n_pars)
mcmc *	mcmc_free (mcmc *m)
void	mcmc_check (const mcmc *m)
Variables
gsl_rng *	r = NULL

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Function Documentation

void init_seed

(

mcmc *

m

)

References r, and mcmc::random.

Referenced by mcmc_init().

void mcmc_check

(

const mcmc *

m

)

checks the pointers and dimensions

References assert, mcmc::data, mcmc::n_par, mcmc::params, mcmc::params_best, and mcmc::params_step.

Referenced by burn_in(), calibrate_first(), calibrate_rest(), main(), markov_chain_step(), markov_chain_step_for(), mcmc_load_data(), mcmc_reuse_data(), setup_chains(), and test_write_prob().

mcmc* mcmc_free

(

mcmc *

m

)

frees the memory used by the class

Returns:

NULL for simple assignment x = mcmc_free(x);

References mcmc::data, debug, get_n_par(), IFSEGV, mcmc_dump_close(), mem_free, mcmc::params, mcmc::params_accepts, mcmc::params_best, mcmc::params_descr, mcmc::params_max, mcmc::params_min, mcmc::params_rejects, mcmc::params_step, r, and mcmc::random.

Referenced by prepare_and_run_sampler(), test_append(), test_create(), test_load(), test_random(), test_write(), and test_write_prob().

mcmc* mcmc_init

(

const unsigned int

n_pars

)

Here are the "private" methods of the class and helper functions create class

Parameters:

n_pars

parameters

References mcmc::accept, assert, mcmc::data, debug, mcmc::files, IFSEGV, init_seed(), mem_calloc, mem_malloc, mcmc::n_iter, mcmc::n_par, mcmc::params, mcmc::params_accepts, mcmc::params_best, mcmc::params_descr, mcmc::params_max, mcmc::params_min, mcmc::params_rejects, mcmc::params_step, mcmc::prior, mcmc::prob, mcmc::prob_best, and mcmc::reject.

Referenced by mcmc_load_params(), test_append(), and test_create().

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Variable Documentation

gsl_rng* r = NULL

Referenced by calc_normalized(), countlines(), dup_vector(), get_accept_rate(), init_seed(), main(), mcmc_dump_close(), mcmc_free(), mcmc_load_params(), and test().