src/mcmc_parser.c File Reference

#include <string.h>
#include <stdio.h>
#include <libgen.h>
#include "mcmc.h"
#include "mcmc_internal.h"
#include "gsl_helper.h"
#include <gsl/gsl_rng.h>
#include "debug.h"
#include "utils.h"

Defines
#define	MAX_LINE_LENGTH   256
#define	IFDEBUGPARSER   if(0)
Functions
char *	my_strdup (const char *s)
void	mcmc_load_data (mcmc *m, const char *datafilename)
void	mcmc_reuse_data (mcmc *m, const mcmc *m_orig)
mcmc *	mcmc_load_params (const char *filename)
mcmc *	mcmc_load (const char *filename, const char *datafilename)

---

Define Documentation

#define IFDEBUGPARSER   if(0)

Referenced by mcmc_load_data(), mcmc_load_params(), and mcmc_reuse_data().

#define MAX_LINE_LENGTH   256

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Function Documentation

mcmc* mcmc_load	(	const char *	filename,
		const char *	datafilename
	)

create and initialize a mcmc class using the configuration given in

Parameters:

filename	file containing the model parameters
datafilename	x/y observed data

Returns:

the created mcmc class

References mcmc_load_data(), and mcmc_load_params().

Referenced by test_load(), test_random(), test_write(), and test_write_prob().

void mcmc_load_data	(	mcmc *	m,
		const char *	datafilename
	)

loads the data from the given file as x/y values

Parameters:

m
datafilename

References dump_s, IFDEBUGPARSER, and mcmc_check().

Referenced by main(), mcmc_load(), and setup_chains().

mcmc* mcmc_load_params

(

const char *

filename

)

create and initialize a mcmc class using the configuration given in

Parameters:

filename

file containing the model parameters

Returns:

the created mcmc class

References assert, countlines(), dump_i, IFDEBUGPARSER, mcmc_init(), openfile(), and r.

Referenced by main(), mcmc_load(), and setup_chains().

void mcmc_reuse_data	(	mcmc *	m,
		const mcmc *	m_orig
	)

reference to another object for x and y-data.

Parameters:

m	the object to fill
m_orig	the object with loaded data

References assert, mcmc::data, debug, IFDEBUGPARSER, and mcmc_check().

Referenced by setup_chains().

char* my_strdup

(

const char *

s

)

References mem_calloc.