src/parallel_tempering_config.h File Reference

#include "mcmc.h"
#include "parallel_tempering_beta.h"

Go to the source code of this file.

Defines
#define	CALIBRATION_FILE   "calibration_results"
Functions
void	write_params_file (mcmc *m)
void	write_calibration_summary (mcmc **chains, unsigned int n_chains)
mcmc **	setup_chains ()
void	read_calibration_file (mcmc **chains, unsigned int n_chains)
void	write_calibrations_file (mcmc **chains, const unsigned int n_chains)

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Define Documentation

#define CALIBRATION_FILE   "calibration_results"

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Function Documentation

void read_calibration_file	(	mcmc **	chains,
		unsigned int	n_chains
	)

read betas, stepwidths and start values of all chains

Returns:

lines read

References CALIBRATION_FILE, get_n_par(), get_params(), set_beta(), set_params_best(), set_params_for(), and set_steps_for().

Referenced by analyse_data_probability(), analyse_marginal_distributions(), calibrate_rest(), and prepare_and_run_sampler().

mcmc** setup_chains

(

)

References mcmc::additional_data, assert, DATA_FILENAME, mcmc_check(), mcmc_load_data(), mcmc_load_params(), mcmc_reuse_data(), mem_calloc, mem_malloc, N_BETA, PARAMS_FILENAME, and set_beta().

Referenced by analyse_data_probability(), analyse_marginal_distributions(), calibrate_first(), calibrate_rest(), and prepare_and_run_sampler().

void write_calibration_summary	(	mcmc **	chains,
		unsigned int	n_chains
	)

References DUMP_FORMAT, dup_vector(), get_beta(), get_chain_beta(), get_n_par(), get_steps(), and get_steps_for().

Referenced by calibrate_rest().

void write_calibrations_file	(	mcmc **	chains,
		const unsigned int	n_chains
	)

References CALIBRATION_FILE, DUMP_FORMAT, get_beta(), get_n_par(), get_params_for(), and get_steps_for().

Referenced by calibrate_first(), and calibrate_rest().

void write_params_file

(

mcmc *

m

)

References DUMP_FORMAT, get_n_par(), get_params_best(), get_params_descr(), get_params_max(), get_params_min(), get_steps(), and PARAMS_FILENAME.

Referenced by calibrate_first().