src/parallel_tempering_config.c File Reference

#include <omp.h>
#include "mcmc.h"
#include "parallel_tempering_config.h"
#include "debug.h"
#include "define_defaults.h"
#include "gsl_helper.h"
#include "utils.h"

Functions
void	write_params_file (mcmc *m)
void	write_calibration_summary (mcmc **chains, unsigned int n_chains)
mcmc **	setup_chains ()
void	read_calibration_file (mcmc **chains, unsigned int n_chains)
void	write_calibrations_file (mcmc **chains, const unsigned int n_chains)

---

Function Documentation

void read_calibration_file	(	mcmc **	chains,
		unsigned int	n_chains
	)

read betas, stepwidths and start values of all chains

Returns:

lines read

References CALIBRATION_FILE, get_n_par(), get_params(), set_beta(), set_params_best(), set_params_for(), and set_steps_for().

Referenced by analyse_data_probability(), analyse_marginal_distributions(), calibrate_rest(), and prepare_and_run_sampler().

mcmc** setup_chains

(

)

References mcmc::additional_data, assert, DATA_FILENAME, mcmc_check(), mcmc_load_data(), mcmc_load_params(), mcmc_reuse_data(), mem_calloc, mem_malloc, N_BETA, PARAMS_FILENAME, and set_beta().

Referenced by analyse_data_probability(), analyse_marginal_distributions(), calibrate_first(), calibrate_rest(), and prepare_and_run_sampler().

void write_calibration_summary	(	mcmc **	chains,
		unsigned int	n_chains
	)

References DUMP_FORMAT, dup_vector(), get_beta(), get_chain_beta(), get_n_par(), get_steps(), and get_steps_for().

Referenced by calibrate_rest().

void write_calibrations_file	(	mcmc **	chains,
		const unsigned int	n_chains
	)

References CALIBRATION_FILE, DUMP_FORMAT, get_beta(), get_n_par(), get_params_for(), and get_steps_for().

Referenced by calibrate_first(), and calibrate_rest().

void write_params_file

(

mcmc *

m

)

References DUMP_FORMAT, get_n_par(), get_params_best(), get_params_descr(), get_params_max(), get_params_min(), get_steps(), and PARAMS_FILENAME.

Referenced by calibrate_first().